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1.
Sci Rep ; 14(1): 10681, 2024 05 09.
Article En | MEDLINE | ID: mdl-38724542

The organic enrichment effects on the meiofauna and nematofauna were assessed for field sediment and other experimental ones enriched with organic matters conducted in the laboratory for 4 weeks. Also, dissolved oxygen (DO) and pH were monitored for each one. The abundance and diversity of meiofaunal groups and nematofauna varied. Strong significant correlations were found between DO and the studied items. Nematoda was the most abundant group in the field sediment and other experimental ones; their counts increased with the increase in organic enrichments and were dominated by deposit feeders. Amphipoda, Ostracoda and predator/omnivore nematodes disappeared in highly organic-enriched sediments. Changes in DO and organic enrichments might be the more attributable reasons for the alteration of the meiobenthic assemblages. The generic compositions of Nematoda provide a good indicator for environmental alterations.


Biodiversity , Geologic Sediments , Animals , Geologic Sediments/chemistry , Nematoda , Oxygen/analysis , Hydrogen-Ion Concentration , Invertebrates , Amphipoda
2.
Water Sci Technol ; 89(9): 2273-2289, 2024 May.
Article En | MEDLINE | ID: mdl-38747949

Water quality predicted accuracy is beneficial to river ecological management and water pollution prevention. Owing to water quality data has the characteristics of nonlinearity and instability, it is difficult to predict the change of water quality. This paper proposes a hybrid water quality prediction model based on variational mode decomposition optimized by the sparrow search algorithm (SSA-VMD) and bidirectional gated recursive unit (BiGRU). First, the sparrow search algorithm selects fuzzy entropy (FE) as the fitness function to optimize the two parameters of VMD, which improves the adaptability of VMD. Second, SSA-VMD is used to decompose the original data into several components with different center frequencies. Finally, BiGRU is employed to predict each component separately, which significantly improves predicted accuracy. The proposed model is validated using data about dissolved oxygen (DO) and the potential of hydrogen (pH) from the Xiaojinshan Monitoring Station in Qiandao Lake, Hangzhou, China. The experimental results show that the proposed model has superior prediction accuracy and stability when compared with other models, such as EMD-based models and other CEEMDAN-based models. The prediction accuracy of DO can reach 97.8% and pH is 96.1%. Therefore, the proposed model can provide technical support for river water quality protection and pollution prevention.


Models, Theoretical , Water Quality , Algorithms , Oxygen/chemistry , Oxygen/analysis , Environmental Monitoring/methods , Hydrogen-Ion Concentration , China
3.
Crit Care Explor ; 6(5): e1094, 2024 May 01.
Article En | MEDLINE | ID: mdl-38727717

OBJECTIVES: Near-infrared spectroscopy (NIRS) is a potentially valuable modality to monitor the adequacy of oxygen delivery to the brain and other tissues in critically ill patients, but little is known about the physiologic determinants of NIRS-derived tissue oxygen saturations. The purpose of this study was to assess the contribution of routinely measured physiologic parameters to tissue oxygen saturation measured by NIRS. DESIGN: An observational sub-study of patients enrolled in the Role of Active Deresuscitation After Resuscitation-2 (RADAR-2) randomized feasibility trial. SETTING: Two ICUs in the United Kingdom. PATIENTS: Patients were recruited for the RADAR-2 study, which compared a conservative approach to fluid therapy and deresuscitation with usual care. Those included in this sub-study underwent continuous NIRS monitoring of cerebral oxygen saturations (SctO2) and quadriceps muscle tissue saturations (SmtO2). INTERVENTION: Synchronized and continuous mean arterial pressure (MAP), heart rate (HR), and pulse oximetry (oxygen saturation, Spo2) measurements were recorded alongside NIRS data. Arterial Paco2, Pao2, and hemoglobin concentration were recorded 12 hourly. Linear mixed effect models were used to investigate the association between these physiologic variables and cerebral and muscle tissue oxygen saturations. MEASUREMENTS AND MAIN RESULTS: Sixty-six patients were included in the analysis. Linear mixed models demonstrated that Paco2, Spo2, MAP, and HR were weakly associated with SctO2 but only explained 7.1% of the total variation. Spo2 and MAP were associated with SmtO2, but together only explained 0.8% of its total variation. The remaining variability was predominantly accounted for by between-subject differences. CONCLUSIONS: Our findings demonstrated that only a small proportion of variability in NIRS-derived cerebral and tissue oximetry measurements could be explained by routinely measured physiologic variables. We conclude that for NIRS to be a useful monitoring modality in critical care, considerable further research is required to understand physiologic determinants and prognostic significance.


Critical Illness , Oximetry , Oxygen Saturation , Spectroscopy, Near-Infrared , Humans , Spectroscopy, Near-Infrared/methods , Male , Female , Oxygen Saturation/physiology , Middle Aged , Aged , Oximetry/methods , Monitoring, Physiologic/methods , Brain/metabolism , Brain/blood supply , United Kingdom , Oxygen/metabolism , Oxygen/blood , Oxygen/analysis , Intensive Care Units , Quadriceps Muscle/metabolism , Quadriceps Muscle/blood supply
4.
PLoS One ; 19(5): e0301605, 2024.
Article En | MEDLINE | ID: mdl-38739592

Oxygen minimum zones (OMZ) represent ~8% of the ocean, with the Pacific as the largest and top expanding area. These regions influence marine ecosystems, promoting anaerobic microbial communities. Nevertheless, only a fraction of microbial diversity has been studied, with fungi being the less explored component. So, herein we analyzed fungal diversity patterns in surface and subsurface sediments along a bathymetric transect using metabarcoding of the ITS1 region in the OMZ of the Mexican Pacific off Mazatlán. We identified 353 amplicon sequence variants (ASV), within the Ascomycota, Basidiomycota, and Rozellomycota. Spatial patterns evidenced higher alpha diversity in nearshore and subsurface subsamples, probably due to temporal fluctuations in organic matter inputs. Small-scale heterogeneity characterized the community with the majority of ASV (269 ASV) occurring in a single subsample, hinting at the influence of local biogeochemical conditions. This baseline data evidenced a remarkable fungal diversity presenting high variation along a bathymetric and vertical transects.


Biodiversity , DNA Barcoding, Taxonomic , Fungi , Geologic Sediments , Oxygen , Geologic Sediments/microbiology , Oxygen/metabolism , Oxygen/analysis , Fungi/genetics , Fungi/classification , Fungi/isolation & purification , Pacific Ocean , Phylogeny
5.
Sensors (Basel) ; 24(8)2024 Apr 20.
Article En | MEDLINE | ID: mdl-38676247

Frequency-domain near-infrared spectroscopy (FD-NIRS) has been used for non-invasive assessment of cortical oxygenation since the late 1990s. However, there is limited research demonstrating clinical validity and general reproducibility. To address this limitation, recording duration for adequate validity and within- and between-day reproducibility of prefrontal cortical oxygenation was evaluated. To assess validity, a reverse analysis of 10-min-long measurements (n = 52) at different recording durations (1-10-min) was quantified via coefficients of variation and Bland-Altman plots. To assess within- and between-day within-subject reproducibility, participants (n = 15) completed 2-min measurements twice a day (morning/afternoon) for five consecutive days. While 1-min recordings demonstrated sufficient validity for the assessment of oxygen saturation (StO2) and total hemoglobin concentration (THb), recordings ≥4 min revealed greater clinical utility for oxy- (HbO) and deoxyhemoglobin (HHb) concentration. Females had lower StO2, THb, HbO, and HHb values than males, but variability was approximately equal between sexes. Intraclass correlation coefficients ranged from 0.50-0.96. The minimal detectable change for StO2 was 1.15% (95% CI: 0.336-1.96%) and 3.12 µM for THb (95% CI: 0.915-5.33 µM) for females and 2.75% (95%CI: 0.807-4.70%) for StO2 and 5.51 µM (95%CI: 1.62-9.42 µM) for THb in males. Overall, FD-NIRS demonstrated good levels of between-day reliability. These findings support the application of FD-NIRS in field-based settings and indicate a recording duration of 1 min allows for valid measures; however, data recordings of ≥4 min are recommended when feasible.


Hemoglobins , Oxygen , Prefrontal Cortex , Spectroscopy, Near-Infrared , Humans , Spectroscopy, Near-Infrared/methods , Male , Female , Prefrontal Cortex/diagnostic imaging , Prefrontal Cortex/metabolism , Adult , Reproducibility of Results , Oxygen/metabolism , Oxygen/analysis , Hemoglobins/analysis , Hemoglobins/metabolism , Oxygen Saturation/physiology , Young Adult , Oxyhemoglobins/metabolism , Oxyhemoglobins/analysis
6.
Sci Rep ; 14(1): 8946, 2024 04 18.
Article En | MEDLINE | ID: mdl-38637621

Oxygen deficiency is a major problem in the Baltic Sea. To study the impact of hypoxia on the functional diversity of benthic fauna and the possibility of macrozoobenthos recovery, data were analyzed in a gradient of oxygen conditions in the Gdansk Basin. The research conducted on the basis of biological traits analysis enabled us to analyze the number, type and spatial distribution of biological traits-a proxy for functions performed by macrozoobenthos. A significant depletion of macrofauna was already observed under conditions of reduced oxygen above the bottom, both in terms of functional diversity and biomass. Although taxa observed in hypoxia (DO < 2 mL L-1) perform a number of functions, the remaining species do not form complex structures in the sediments or cause deep bioturbation and bioirrigation. Moreover, their extremely low biomass plays an irrelevant role in benthic-pelagic coupling. Thus, benthic fauna under hypoxia is not an element that ensures the functioning of the ecosystem. We assess that traits important for species dispersal and the presence of taxa resistant to short-term hypoxia in the oxic zone above the halocline provide a "backup" for ecosystem functioning under altered diverse oxygen conditions below the halocline after cessation of hypoxia in the southern Baltic Sea.


Ecosystem , Oxygen , Humans , Oxygen/analysis , Biomass , Baltic States , Hypoxia , Geologic Sediments/chemistry
7.
J Biotechnol ; 387: 79-88, 2024 May 20.
Article En | MEDLINE | ID: mdl-38582408

Among all the operating parameters that control the cell culture environment inside bioreactors, appropriate mixing and aeration are crucial to ensure sufficient oxygen supply, homogeneous mixing, and CO2 stripping. A model-based manufacturing facility fit approach was applied to define agitation and bottom air flow rates during the process scale-up from laboratory to manufacturing, of which computational fluid dynamics (CFD) was the core modeling tool. The realizable k-ε turbulent dispersed Eulerian gas-liquid flow model was established and validated using experimental values for the volumetric oxygen transfer coefficient (kLa). Model validation defined the process operating parameter ranges for application of the model, identified mixing issues (e.g., impeller flooding, dissolved oxygen gradients, etc.) and the impact of antifoam on kLa. Using the CFD simulation results as inputs to the models for oxygen demand, gas entrance velocity, and CO2 stripping aided in the design of the agitation and bottom air flow rates needed to meet cellular oxygen demand, control CO2 levels, mitigate risks for cell damage due to shear, foaming, as well as fire hazards due to high O2 levels in the bioreactor gas outlet. The recommended operating conditions led to the completion of five manufacturing runs with a 100% success rate. This model-based approach achieved a seamless scale-up and reduced the required number of at-scale development batches, resulting in cost and time savings of a cell culture commercialization process.


Bioreactors , Cell Culture Techniques , Hydrodynamics , Oxygen , Cell Culture Techniques/methods , Cell Culture Techniques/instrumentation , Oxygen/metabolism , Oxygen/analysis , Carbon Dioxide/metabolism , Computer Simulation , CHO Cells , Cricetulus , Models, Biological , Animals
8.
Sci Data ; 11(1): 350, 2024 Apr 08.
Article En | MEDLINE | ID: mdl-38589476

Maintaining sufficient cerebral oxygen metabolism is crucial for human survival, especially in challenging conditions such as high-altitudes. Human cognitive neural activity is sensitive to fluctuations in oxygen levels. However, there is a lack of publicly available datasets on human behavioural responses and cerebral dynamics assessments during the execution of conflicting tasks in natural hypoxic environments. We recruited 80 healthy new immigrant volunteers (males, aged 20 ± 2 years) and employed the Stroop cognitive conflict paradigm. After a two-week exposure to both high and low-altitudes, the behavioural performance, prefrontal oxygen levels, and electroencephalography (EEG) signals were recorded. Comparative analyses were conducted on the behavioural reaction times and accuracy during Stroop tasks, and statistical analyses of participants' prefrontal oxygen levels and EEG signals were performed. We anticipate that our open-access dataset will contribute to the development of monitoring devices and algorithms, designed specifically for measuring cerebral oxygen and EEG dynamics in populations exposed to extreme environments, particularly among individuals suffering from oxygen deficiency.


Altitude , Electroencephalography , Humans , Male , Oxygen/analysis , Reaction Time/physiology , Stroop Test , Young Adult , Emigrants and Immigrants
9.
Chemosphere ; 357: 142068, 2024 Jun.
Article En | MEDLINE | ID: mdl-38636921

Due to limited land availability in municipal wastewater treatment plants, integrated fixed-film activated sludge (IFAS) technology offers significant advantages in improving nitrogen removal performance and treatment capacity. In this study, two systems, IFAS and Anaerobic-Anoxic-Oxic Activated sludge process (AAO), were compared by adjusting parameters such as hydraulic retention time (HRT), nitrifying solution recycle ratio, sludge recycle ratio, and dissolved oxygen (DO). The objective was to investigate pollutant removal capacity and differences in microbial community composition between the two systems. The study showed that, at an HRT of 12 h, the IFAS system exhibited an average increase of 5.76%, 8.85%, and 12.79% in COD, NH4+-N, and TN removal efficiency respectively, compared to the AAO system at an HRT of 16 h. The TP concentration in the IFAS system reached 0.82 mg/L without the use of additives. The IFAS system demonstrated superior effluent results under lower operating conditions of HRT, nitrification solution recycle ratio, and DO. The 16S rDNA analysis revealed higher abundance of denitrification-related associated flora, including Proteobacteria, Bacteroidetes, and Planctomycetota, in the IFAS system compared to the AAO system. Similarities were observed between microorganisms attached to the media and activated sludge in the anaerobic, anoxic, and oxic tanks. q-PCR analysis indicated that the incorporation of filler material in the IFAS system resulted in similar abundance of nitrifying bacteria genes on the biofilm as in the oxic tank. Additionally, denitrifying genes showed higher levels due to aeration scouring and the presence of alternating aerobic-anaerobic environments on the biofilm surface, enhancing nitrogen removal efficiency.


Bioreactors , Nitrogen , Sewage , Waste Disposal, Fluid , Sewage/microbiology , Waste Disposal, Fluid/methods , Nitrogen/metabolism , Nitrogen/analysis , Bioreactors/microbiology , Anaerobiosis , Nitrification , Denitrification , Wastewater/chemistry , Bacteria/metabolism , Bacteria/genetics , Bacteria/classification , Oxygen/analysis , Oxygen/metabolism , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/metabolism
10.
Meat Sci ; 213: 109505, 2024 Jul.
Article En | MEDLINE | ID: mdl-38579509

Volatile organic compounds (VOCs) indicative of pork microbial spoilage can be quantified rapidly at trace levels using selected-ion flow-tube mass spectrometry (SIFT-MS). Packaging atmosphere is one of the factors influencing VOC production patterns during storage. On this basis, machine learning would help to process complex volatolomic data and predict pork microbial quality efficiently. This study focused on (1) investigating model generalizability based on different nested cross-validation settings, and (2) comparing the predictive power and feature importance of nine algorithms, including Artificial Neural Network (ANN), k-Nearest Neighbors, Support Vector Regression, Decision Tree, Partial Least Squares Regression, and four ensemble learning models. The datasets used contain 37 VOCs' concentrations (input) and total plate counts (TPC, output) of 350 pork samples with different storage times, including 225 pork loin samples stored under three high-O2 and three low-O2 conditions, and 125 commercially packaged products. An appropriate choice of cross-validation strategies resulted in trustworthy and relevant predictions. When trained on all possible selections of two high-O2 and two low-O2 conditions, ANNs produced satisfactory TPC predictions of unseen test scenarios (one high-O2 condition, one low-O2 condition, and the commercial products). ANN-based bagging outperformed other employed models, when TPC exceeded ca. 6 log CFU/g. VOCs including benzaldehyde, 3-methyl-1-butanol, ethanol and methyl mercaptan were identified with high feature importance. This elaborated case study illustrates great prospects of real-time detection techniques and machine learning in meat quality prediction. Further investigations on handling low VOC levels would enhance the model performance and decision making in commercial meat quality control.


Food Microbiology , Machine Learning , Mass Spectrometry , Volatile Organic Compounds , Animals , Volatile Organic Compounds/analysis , Swine , Mass Spectrometry/methods , Food Storage , Food Packaging/methods , Neural Networks, Computer , Pork Meat/analysis , Pork Meat/microbiology , Oxygen/analysis
11.
Glob Chang Biol ; 30(5): e17301, 2024 May.
Article En | MEDLINE | ID: mdl-38687496

Streams are significant contributors of greenhouse gases (GHG) to the atmosphere, and the increasing number of stressors degrading freshwaters may exacerbate this process, posing a threat to climatic stability. However, it is unclear whether the influence of multiple stressors on GHG concentrations in streams results from increases of in-situ metabolism (i.e., local processes) or from changes in upstream and terrestrial GHG production (i.e., distal processes). Here, we hypothesize that the mechanisms controlling multiple stressor effects vary between carbon dioxide (CO2) and methane (CH4), with the latter being more influenced by changes in local stream metabolism, and the former mainly responding to distal processes. To test this hypothesis, we measured stream metabolism and the concentrations of CO2 (pCO2) and CH4 (pCH4) in 50 stream sites that encompass gradients of nutrient enrichment, oxygen depletion, thermal stress, riparian degradation and discharge. Our results indicate that these stressors had additive effects on stream metabolism and GHG concentrations, with stressor interactions explaining limited variance. Nutrient enrichment was associated with higher stream heterotrophy and pCO2, whereas pCH4 increased with oxygen depletion and water temperature. Discharge was positively linked to primary production, respiration and heterotrophy but correlated negatively with pCO2. Our models indicate that CO2-equivalent concentrations can more than double in streams that experience high nutrient enrichment and oxygen depletion, compared to those with oligotrophic and oxic conditions. Structural equation models revealed that the effects of nutrient enrichment and discharge on pCO2 were related to distal processes rather than local metabolism. In contrast, pCH4 responses to nutrient enrichment, discharge and temperature were related to both local metabolism and distal processes. Collectively, our study illustrates potential climatic feedbacks resulting from freshwater degradation and provides insight into the processes mediating stressor impacts on the production of GHG in streams.


Os rios são grandes emissores de gases com efeito de estufa (GEE) para a atmosfera, e o crescente número de agentes de stress que degradam os rios pode exacerbar este processo, e constituir uma ameaça à estabilidade climática. No entanto, não é claro se o efeito dos impactos humanos nas concentrações de GEE na água está associado ao aumento do metabolismo local do rio (processos locais) ou ao aumento da produção de GEE nas zonas a montante dos rios ou nas zonas terrestres adjacentes (processos distais). A nossa hipótese é que os mecanismos que controlam os efeitos dos impactos humanos na emissão de GEE variam entre o dióxido de carbono (CO2) e o metano (CH4). A nossa previsão é que o CO2 responde principalmente a processos distais, enquanto o CH4 é mais influenciado por alterações no metabolismo local dos cursos de água. Para avaliar esta hipótese, medimos o metabolismo aquático e as concentrações de CO2 (pCO2) e CH4 (pCH4) em 50 rios que abrangem gradientes de enriquecimento em nutrientes, depleção de oxigénio, stress térmico, degradação da zona ribeirinha e caudal. Os nossos resultados indicam que estes agentes de stress tiveram efeitos aditivos no metabolismo e nas concentrações de GEE nos rios, e que as interações entre os agentes de stress tiveram pouca capacidade preditiva. O enriquecimento em nutrientes foi associado a um aumento da heterotrofia e pCO2, enquanto o pCH4 aumentou com a depleção de oxigénio e com a temperatura da água. O caudal estava positivamente correlacionado com a produção primária, a respiração e a heterotrofia, mas negativamente correlacionado com o pCO2. Os nossos modelos indicam que as concentrações equivalentes de CO2 podem duplicar em rios eutrofizados e com baixa concentração de oxigénio, em comparação com os rios oligotróficos e com águas bem oxigenadas. A aplicação de modelos de equações estruturais mostrou que os efeitos do enriquecimento em nutrientes e do caudal no pCO2 estavam relacionados com processos distais e não com o metabolismo local. Em contrapartida, as respostas do pCH4 ao enriquecimento de nutrientes, ao caudal e à temperatura estavam relacionadas tanto com o metabolismo local como com processos distais. O nosso estudo demonstra que a degradação dos rios e dos ecossistemas ribeirinhos pode ter efeitos negativos na estabilidade climática e fornece informação relevante sobre os processos biogeoquímicos que medeiam os impactos humanos na produção de GEE nos rios.


Carbon Dioxide , Greenhouse Gases , Methane , Rivers , Greenhouse Gases/analysis , Rivers/chemistry , Carbon Dioxide/analysis , Carbon Dioxide/metabolism , Methane/analysis , Methane/metabolism , Climate Change , Temperature , Oxygen/analysis , Oxygen/metabolism
12.
J Environ Manage ; 358: 120820, 2024 May.
Article En | MEDLINE | ID: mdl-38603849

The chemical oxygen demand (COD) in the Seto Inland Sea, Japan has increased in the recent decades due to the increase of bottom dissolved oxygen (DO) concentration which stimulated several autotrophic microorganisms, specially sulfur oxidizing bacteria (SOB). This increased SOB activity due to the oxygenation of the bottom sediment synthesized new organic matter (OM) which contributed dissolved organic carbon to the overlying seawater. This phenomenon further led to hypoxia in some subareas in the Seto Inland Sea. Higher pH or alkaline environment has been found to be an unfavorable condition for SOB. In this research, we used decarburization slag to elevate the pH of sediment to control the SOB activity and consequently reduce OM production in the sediment. Ignition loss of the surface sediment increased from 5.14% 6.38% after 21 days of incubation with aeration; whereas the sediment showed the less ignition loss of 5.71% after 21 days when the slag was incubated in the same experimental setup. Microbial community analysis showed less SOB activity in the slag added aerated sediment which accounts for the controlled increase of OM in the sediment. An additional experiment was conducted with magnesium oxide to confirm whether elevated pH can control the OM increase in sediment due to rising DO. All these results showed that decarburization slag can elevate the pH of the sediment to a certain level which can control the SOB activity followed by controlled increase of OM in the sediment. The findings may be beneficial to control accumulation of sedimentary OM which can act as a source of organic carbon in the overlying seawater.


Carbon , Geologic Sediments , Oxygen , Seawater , Geologic Sediments/chemistry , Geologic Sediments/microbiology , Carbon/chemistry , Oxygen/chemistry , Oxygen/analysis , Seawater/chemistry , Seawater/microbiology , Hydrogen-Ion Concentration , Japan , Bacteria/metabolism
13.
Sci Total Environ ; 926: 171943, 2024 May 20.
Article En | MEDLINE | ID: mdl-38527546

Monoculture plantations in China, characterized by the continuous cultivation of a single species, pose challenges to timber accumulation and understory biodiversity, raising concerns about sustainability. This study investigated the impact of continuous monoculture plantings of Chinese fir (Cunninghamia lanceolata [Lamb.] Hook.) on soil properties, dissolved organic matter (DOM), and microorganisms over multiple generations. Soil samples from first to fourth-generation plantations were analyzed for basic chemical properties, DOM composition using Fourier transform ion cyclotron resonance mass spectrometry, and microorganisms via high-throughput sequencing. Results revealed a significant decline in nitrate nitrogen content with successive rotations, accompanied by an increase in easily degradable compounds like carbohydrates, aliphatic/proteins, tannins, Carbon, Hydrogen, Oxygen and Nitrogen- (CHON) and Carbon, Hydrogen, Oxygen and Sulfur- (CHOS) containing compounds. However, the recalcitrant compounds, such as lignin and carboxyl-rich alicyclic molecules (CRAMs), condensed aromatics and Carbon, Hydrogen and Oxygen- (CHO) containing compounds decreased. Microorganism diversity, abundance, and structure decreased with successive plantations, affecting the ecological niche breadth of fungal communities. Bacterial communities were strongly influenced by DOM composition, particularly lignin/CRAMs and tannins. Continuous monoculture led to reduced soil nitrate, lignin/CRAMs, and compromised soil quality, altering chemical properties and DOM composition, influencing microbial community assembly. This shift increased easily degraded DOM, accelerating soil carbon and nitrogen cycling, ultimately reducing soil carbon sequestration. From environmental point of view, the study emphasizes the importance of sustainable soil management practices in continuous monoculture systems. Particularly the findings offer valuable insights for addressing challenges associated with monoculture plantations and promoting long-term ecological sustainability.


Cunninghamia , Microbiota , Dissolved Organic Matter , Nitrates/analysis , Lignin/metabolism , Tannins/analysis , Tannins/metabolism , Soil/chemistry , Organic Chemicals/analysis , Sulfur Compounds/metabolism , Nitrogen/analysis , Carbon/analysis , Hydrogen/analysis , Oxygen/analysis
14.
Geobiology ; 22(2): e12593, 2024.
Article En | MEDLINE | ID: mdl-38476006

Biological processes in the Proterozoic Ocean are often inferred from modern oxygen-deficient environments (MODEs) or from stable isotopes in preserved sediment. To date, few MODE studies have simultaneously quantified carbon fixation genes and attendant stable isotopic signatures. Consequently, how carbon isotope patterns reflect these pathways has not been thoroughly vetted. Addressing this, we profiled planktonic productivity and quantified carbon fixation pathway genes and associated organic carbon isotope values (δ13 CPOC ) of size-fractionated (0.2-2.7 and >2.7 µm) particulate matter from meromictic Fayetteville Green Lake, NY, USA. The high-O2 Calvin-Benson-Bassham (CBB) gene (cbbL) was most abundant in the <2.7 µm size fraction in shallow oxic and deep hypoxic waters, corresponding with cyanobacterial and eukaryote algal populations. The low-O2 CBB gene (cbbM) was most abundant near the lower oxycline boundary in the larger size fraction, coincident with purple sulfur bacteria populations. The reverse citric acid cycle gene (aclB) was equally abundant in both size fractions in the deepest photic zone, coinciding with green sulfur bacteria populations. Methane coenzyme reductase A (mcrA), of anaerobic methane cyclers, was most abundant at the lower oxycline boundary in both size fractions, coinciding with Methanoregula populations. δ13 CPOC values overlapped with the high-O2 CBB fixation range except for two negative excursions near the lower oxycline boundary, likely reflecting assimilation of isotopically-depleted groundwater-derived carbon by autotrophs and sulfate-reducers. Throughout aphotic waters, δ13 CPOC values of the large size fraction became 13 C-enriched, likely reflecting abundant purple sulfur bacterial aggregates. Eukaryote algae- or cyanobacteria-like isotopic signatures corresponded with increases in cbbL, cbbM, and aclB, and enrichment of exopolymer-rich prokaryotic photoautotrophs aggregates. Results suggest that δ13 CPOC values of preserved sediments from areas of the Proterozoic Ocean with sulfidic photic zones may reflect a mixture of alternate carbon-fixing populations exported from the deep photic zone, challenging the paradigm that sedimentary stable carbon isotope values predominantly reflect oxygenic photosynthesis from surface waters.


Chromatiaceae , Cyanobacteria , Carbon/metabolism , Lakes/microbiology , Carbon Isotopes/analysis , Cyanobacteria/metabolism , Oxygen/analysis , Chromatiaceae/metabolism , Methane , Oceans and Seas
15.
New Phytol ; 242(3): 975-987, 2024 May.
Article En | MEDLINE | ID: mdl-38439696

Stable oxygen isotope ratio of tree-ring α-cellulose (δ18Ocel) yields valuable information on many aspects of tree-climate interactions. However, our current understanding of the mechanistic controls on δ18Ocel is incomplete, with a knowledge gap existent regarding the fractionation effect characterizing carbonyl-water oxygen exchange during sucrose translocation from leaf to phloem. To address this insufficiency, we set up an experimental system integrating a vapor 18O-labeling feature to manipulate leaf-level isotopic signatures in tree saplings enclosed within whole-canopy gas-exchange cuvettes. We applied this experimental system to three different tree species to determine their respective relationships between 18O enrichment of sucrose in leaf lamina (Δ18Ol_suc) and petiole phloem (Δ18Ophl_suc) under environmentally/physiologically stable conditions. Based on the determined Δ18Ophl_suc-Δ18Ol_suc relationships, we estimated that on average, at least 25% of the oxygen atoms in sucrose undergo isotopic exchange with water along the leaf-to-phloem translocation path and that the biochemical fractionation factor accounting for such exchange is c. 34‰, markedly higher than the conventionally assumed value of 27‰. Our study represents a significant step toward quantitative elucidation of the oxygen isotope dynamics during sucrose translocation in trees. This has important implications with respect to improving the δ18Ocel model and its related applications in paleoclimatic and ecophysiological contexts.


Oxygen , Trees , Oxygen/analysis , Sucrose , Water/analysis , Phloem , Oxygen Isotopes/analysis , Plant Leaves/chemistry , Carbon Isotopes/analysis
16.
JAMA ; 331(14): 1225-1226, 2024 04 09.
Article En | MEDLINE | ID: mdl-38501213

This JAMA Guide to Statistics and Methods article explains effect score analyses, an approach for evaluating the heterogeneity of treatment effects, and examines its use in a study of oxygen-saturation targets in critically ill patients.


Critical Illness , Models, Statistical , Patient Acuity , Treatment Effect Heterogeneity , Humans , Critical Illness/therapy , Oximetry , Oxygen/analysis , Randomized Controlled Trials as Topic
18.
Food Chem ; 447: 139010, 2024 Jul 30.
Article En | MEDLINE | ID: mdl-38513487

Assessment of trace metal concentrations in plant oils has been considered a crucial quality control marker for potential health risks, oil flavour, and oxidative stability. A straightforward inductively coupled plasma mass spectrometry (ICP-MS) methodology was developed and validated through introduction of argon:oxygen gas mixture into plasma, allowing for a direct elemental analysis of organic matrices. This approach offers the advantage of a simple one-step preparation of plant oil samples with negligible contamination risks. The complete solubilization of the oil matrix enables the determination of total metal content from a single test tube with low dilution factor of 5. The modified plasma conditions resulted in the development of a robust and accurate ICP-MS method providing limits of detection at sub ng·g-1 levels. The ICP-MS method allowed the determination of trace levels of Ba, Cd, Cu, Fe, Mn, Pb, Sn, V, and Zn in olive, sunflower and rapeseed oils.


Oxygen , Trace Elements , Oxygen/analysis , Trace Elements/analysis , Metals , Plant Oils/chemistry , Mass Spectrometry/methods
19.
Chemosphere ; 354: 141687, 2024 Apr.
Article En | MEDLINE | ID: mdl-38484990

Biogas obtained from livestock manure is used as fuel for solid oxide fuel cells. Although H2S is a typical biogas, it is a fatal disadvantage for fuel-cell power generation and, thus, must be removed. In this study, we proposed an effective method for sulfide removal from water using a multi-hole dielectric barrier discharge (DBD) system. In this system, active species, such as ozone, ultraviolet rays, hydroxyl radicals, and hydrogen peroxide, were simultaneously generated. Under optimal conditions, dissolved sulfide (initial concentration: 120 mg/L) was completely degraded within 10 min in air plasma and 6 min in oxygen plasma. Changes in the physical properties of the sulfide-treated water were confirmed by measuring the pH, oxidation-reduction potential, and dissolved oxygen. Results of the by-product analysis showed that sulfide was converted into sulfate by reacting with a large amount of ozone, and the active species were emitted from the multi-hole DBD system. In summary, multi-hole DBD technology has demonstrated merit as a water-contaminant purification technology and for the removal of dissolved sulfide.


Ozone , Water Pollutants, Chemical , Water , Biofuels , Water Pollutants, Chemical/analysis , Oxygen/analysis , Ozone/chemistry
20.
Analyst ; 149(9): 2609-2620, 2024 Apr 29.
Article En | MEDLINE | ID: mdl-38535830

Cellular metabolism has been closely linked to activation state in cells of the immune system, and the oxygen consumption rate (OCR) in particular serves as a valuable metric for assessing metabolic activity. Several oxygen sensing assays have been reported for cells in standard culture conditions. However, none have provided a spatially resolved, optical measurement of local oxygen consumption in intact tissue samples, making it challenging to understand regional dynamics of consumption. Therefore, here we established a system to monitor the rates of oxygen consumption in ex vivo tissue slices, using murine lymphoid tissue as a case study. By integrating an optical oxygen sensor into a sealed perfusion chamber and incorporating appropriate correction for photobleaching of the sensor and of tissue autofluorescence, we were able to visualize and quantify rates of oxygen consumption in tissue. This method revealed for the first time that the rate of oxygen consumption in naïve lymphoid tissue was higher in the T cell region compared to the B cell and cortical regions. To validate the method, we measured OCR in the T cell regions of naïve lymph node slices using the optical assay and estimated the consumption rate per cell. The predictions from the optical assay were similar to reported values and were not significantly different from those of the Seahorse metabolic assay, a gold standard method for measuring OCR in cell suspensions. Finally, we used this method to quantify the rate of onset of tissue hypoxia for lymph node slices cultured in a sealed chamber and showed that continuous perfusion was sufficient to maintain oxygenation. In summary, this work establishes a method to monitor oxygen consumption with regional resolution in intact tissue explants, suitable for future use to compare tissue culture conditions and responses to stimulation.


Lymph Nodes , Oxygen Consumption , Animals , Oxygen Consumption/physiology , Lymph Nodes/metabolism , Lymph Nodes/cytology , Mice , Mice, Inbred C57BL , Oxygen/metabolism , Oxygen/analysis , T-Lymphocytes/metabolism , T-Lymphocytes/cytology
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